Skip to main content

Using simulation to interpret experimental data in terms of protein conformational ensembles.

Author
Abstract
:

In their biological environment, proteins are dynamic molecules, necessitating an ensemble structural description. Molecular dynamics simulations and solution-state experiments provide complimentary information in the form of atomically detailed coordinates and averaged or distributions of structural properties or related quantities. Recently, increases in the temporal and spatial scale of conformational sampling and comparison of the more diverse conformational ensembles thus generated have revealed the importance of sampling rare events. Excitingly, new methods based on maximum entropy and Bayesian inference are promising to provide a statistically sound mechanism for combining experimental data with molecular dynamics simulations.

Year of Publication
:
2017
Journal
:
Current opinion in structural biology
Volume
:
43
Number of Pages
:
79-87
ISSN Number
:
0959-440X
URL
:
https://linkinghub.elsevier.com/retrieve/pii/S0959-440X(16)30205-6
DOI
:
10.1016/j.sbi.2016.11.018
Short Title
:
Curr Opin Struct Biol
Download citation